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On a login node, load python3

Code Block
module load python3globus

Login to Globus

Code Block

[marka@talapas-ln1marka@login1 ~]$ globus login
Please authenticate with Globus here:
------------------------------------
https://auth.globus.org/v2/oauth2/authorize?client_id=b6d480cb-fb69-486b-84e5-c46d22554d6b&redirect_uri=https%3A%2F%2Fauth.globus.org%2Fv2%2Fweb%2Fauth-code&scope=openid+profile+email+urn%3Aglobus%3Aauth%3Ascope%3Aauth.globus.org%3Aview_identity_set+urn%3Aglobus%3Aauth%3Ascope%3Atransfer.api.globus.org%3Aall&state=_default&response_type=code&access_type=offline&prompt=login
------------------------------------

Enter the resulting Authorization Code here: <xxxxxxxxxxxxxxxxxx>

You have successfully logged in to the Globus CLI!

You can check your primary identity with
  globus whoami

For information on which of your identities are in session use
  globus session show

Logout of the Globus CLI with
  globus logout

Discover the source endpoint share ID. This is my globus share on Talapas

Code Block

[marka@talapas-ln1marka@login1 ~]$ globus endpoint search 'Talapas'
ID                                   | Owner             | Display Name
------------------------------------ | ----------------- | ----------------
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adc038d8-0fcb-11ea-8a67-0e35e66293c2 | marka@uoregon.edu | Talapas_marka
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Discover the destination endpoint ID. This is the UO - Information Services endpoint top level share. (This endpoint has since been deprecated but the process is the same for other endpoints)

Code Block

[marka@talapas-ln1marka@login1 marka_globusEP]$ globus endpoint search 'UO - Information Services'
ID                                   | Owner                | Display Name
------------------------------------ | -------------------- | -------------------------
8fcb5320-1b71-11e9-9f9f-0a06afd4a22e | uoregon@globusid.org | UO - Information Services

Create variables for each endpoint ID for ease of use and list the contents of each. ep1 is Talapas and ep2 is UO - Information Services

Code Block

[marka@talapas-ln1marka@login1 ~]$ ep1=adc038d8-0fcb-11ea-8a67-0e35e66293c2
[marka@talapas-ln1marka@login1 ~]$ ep2=8fcb5320-1b71-11e9-9f9f-0a06afd4a22e
[marka@talapas-ln1marka@login1 ~]$ globus ls $ep1
mk_script_for_Talapas.R
[marka@talapas-ln1marka@login1 ~]$ globus ls $ep2
testu/
testf

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Initiate a single file transfer from the Globus CLI

Code Block

[marka@talapas-ln1marka@login1 ~]$ globus transfer $ep1:/mk_script_for_Talapas.R $ep2:/globus/marka/mk_script_for_Talapas.R
Message: The transfer has been accepted and a task has been created and queued for execution
Task ID: b3ad3038-109e-11ea-bea0-02fcc9cdd752

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New contents of the destination endpoint showing the new file, mk_script_for_Talapas.R.

Code Block
[marka@talapas-ln1marka@login1 ~]$ globus ls $ep2 testu/ mk_script_for_Talapas.R testf

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Info

Look into the globus transfer reference page for information on the command line options available, https://docs.globus.org/cli/reference/transfer/

In particular ‘--sync-level’, ‘--recursive’

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